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Best Papers
1. Ariel S. Schwartz and Lior Pachter
 Multiple Alignment by Sequence Annealing
2. Andreas Hildebrandt, Hans-Peter Lenhof, Ralf Blossey, Sergej Rjasanow and Oliver Kohlbacher
 Electrostatic Potentials of Proteins in Water: A Structured Continuum Approach
3. Matthias Bernt, Daniel Merkle and Martin Middendorf
 Using Median Sets for Inferring Phylogenetic Trees
Best Student Papers
1. Fabian Birzele, Jan Erik Gewehr, Gergely Csaba and Ralf Zimmer
 Vorolign - Fast Structural Alignment Using Voronoi Contacts
2. Barak Raveh, Ofer Rahat, Ronen Basri and Gideon Schreiber
 Rediscovering Secondary Structures as Network Motifs - An Unsupervised Learning Approach
3. Jennifer Listgarten, Sam T. Roweis, Radford M. Neal, Peter Wong and Andrew Emili
 Difference Detection in LC-MS Data for Protein Biomarker Discovery

Top 5 Posters
N01. Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand and Dmitrij Frishman
 Association Rule Mining and Protein Databases: Exceptions Point to Annotation Errors
M36. Oranit Dror, Yuval Inbar, Dina Schneidman, Ruth Nussinov and Haim Wolfson
 Pharmacophore Detection: Multiple Flexible Alignment of Drug-Like Molecules
B12. Yonit Halperin, Chaim Linhart, Gidi Weber and Ron Shamir
 The AMADEUS Motif Discovery Tool
B23. Orna Man and Yitzhak Pilpel
 Phenotypic Divergence among Diverse Yeast Species is Affected by Translational Control Signals in Protein Coding Sequence
H06. Israel Steinfeld, Ron Shamir and Martin Kupiec
 A Systematic Analysis of Chromatin Modifiers that Act as Transcriptional Co-Factors in the Yeast Genome